J3_9XFK_007

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XFK_007 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1078

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9XFK|1|I|C|698
9XFK|1|I|A|699
9XFK|1|I|G|700
*
9XFK|1|I|C|732
9XFK|1|I|G|733
9XFK|1|I|A|734
9XFK|1|I|A|735
9XFK|1|I|C|736
*
9XFK|1|I|G|760
9XFK|1|I|A|761
9XFK|1|I|U|762
9XFK|1|I|G|763

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL2