J3_9XFL_005

3D structure

PDB id

9XFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

In vitro structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9XFL|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XFL_005 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0475

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9XFL|1|I|G|297
9XFL|1|I|G|298
9XFL|1|I|A|299
9XFL|1|I|A|300
9XFL|1|I|G|301
*
9XFL|1|I|C|316
9XFL|1|I|G|317
9XFL|1|I|C|318
9XFL|1|I|G|319
9XFL|1|I|A|320
9XFL|1|I|U|321
9XFL|1|I|A|322
9XFL|1|I|C|323
9XFL|1|I|A|324
9XFL|1|I|G|325
*
9XFL|1|I|C|337
9XFL|1|I|G|338
9XFL|1|I|U|339
9XFL|1|I|A|340
9XFL|1|I|C|341

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

Large ribosomal subunit protein uL24