J3_9XTC_001

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XTC_001 not in the Motif Atlas

Geometric match to J3_8B0X_001

Geometric discrepancy: 0.0396

The information below is about J3_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.2

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9XTC|1|A|G|46
9XTC|1|A|C|47
*
9XTC|1|A|G|361
9XTC|1|A|G|362
9XTC|1|A|A|363
9XTC|1|A|A|364
9XTC|1|A|U|365
9XTC|1|A|A|366
9XTC|1|A|U|367
*
9XTC|1|A|A|393
9XTC|1|A|G|394
9XTC|1|A|C|395

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16