J3_9XWO_011

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9XWO|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9XWO_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1667

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9XWO|1|A|C|990
9XWO|1|A|U|991
9XWO|1|A|U|992
9XWO|1|A|G|993
9XWO|1|A|A|994
9XWO|1|A|C|995
9XWO|1|A|A|996
9XWO|1|A|U|997
*
9XWO|1|A|A|1044
9XWO|1|A|C|1045
9XWO|1|A|A|1046
9XWO|1|A|G|1047
*
9XWO|1|A|C|1210
9XWO|1|A|U|1211
9XWO|1|A|U|1212
9XWO|1|A|A|1213
9XWO|1|A|C|1214
9XWO|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14