J3_9XWO_031
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 9XWO|1|a|U|2334, 9XWO|1|a|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9XWO_031 not in the Motif Atlas
- Geometric match to J3_8B0X_022
- Geometric discrepancy: 0.1113
- The information below is about J3_8B0X_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.3
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9XWO|1|a|C|2295
9XWO|1|a|U|2296
9XWO|1|a|A|2297
*
9XWO|1|a|U|2321
9XWO|1|a|A|2322
9XWO|1|a|G|2323
*
9XWO|1|a|C|2332
9XWO|1|a|A|2333
9XWO|1|a|U|2334
9XWO|1|a|A|2335
9XWO|1|a|A|2336
9XWO|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
- Chain v
- Large ribosomal subunit protein bL27
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