J3_9Y49_036

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|B2|C|1218
9Y49|1|B2|C|1219
9Y49|1|B2|A|1220
9Y49|1|B2|G|1221
*
9Y49|1|B2|C|1645
9Y49|1|B2|C|1646
9Y49|1|B2|A|1647
9Y49|1|B2|G|1648
9Y49|1|B2|U|1649
9Y49|1|B2|A|1650
9Y49|1|B2|A|1651
*
9Y49|1|B2|U|1673
9Y49|1|B2|G|1674
9Y49|1|B2|A|1675
9Y49|1|B2|U|1676
9Y49|1|B2|U|1677
9Y49|1|B2|A|1678
9Y49|1|B2|A|1679
9Y49|1|B2|G|1680

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AF

40S ribosomal protein S5

Chain AQ

40S ribosomal protein S16

Chain Ac

40S ribosomal protein S28