J3_9Y4G_001
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9Y4G|1|A5|U|354, 9Y4G|1|A5|A|362, 9Y4G|1|A8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A5|C|351
9Y4G|1|A5|G|352
9Y4G|1|A5|A|353
9Y4G|1|A5|U|354
9Y4G|1|A5|A|355
9Y4G|1|A5|G|356
9Y4G|1|A5|U|357
9Y4G|1|A5|C|358
9Y4G|1|A5|A|359
9Y4G|1|A5|A|360
9Y4G|1|A5|C|361
9Y4G|1|A5|A|362
9Y4G|1|A5|A|363
9Y4G|1|A5|G|364
9Y4G|1|A5|U|365
9Y4G|1|A5|A|366
9Y4G|1|A5|C|367
*
9Y4G|1|A5|G|374
9Y4G|1|A5|G|375
9Y4G|1|A5|A|376
9Y4G|1|A5|A|377
9Y4G|1|A5|A|378
9Y4G|1|A5|G|379
*
9Y4G|1|A8|C|21
9Y4G|1|A8|U|22
9Y4G|1|A8|C|23
9Y4G|1|A8|G|24
Current chains
- Chain A5
- LSU-alpha rRNA
- Chain A8
- 5.8S rRNA (157-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CY
- 60S ribosomal protein L26
- Chain Cj
- 60S ribosomal protein L37
- Chain Cl
- 60S ribosomal protein L39
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