J3_9Y4G_003

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

9Y4G|1|A5|G|409, 9Y4G|1|A5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y4G_003 not in the Motif Atlas

Homologous match to J3_9PN5_006

Geometric discrepancy: 0.1756

The information below is about J3_9PN5_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.3

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9Y4G|1|A5|U|380
9Y4G|1|A5|U|381
9Y4G|1|A5|G|382
9Y4G|1|A5|A|383
9Y4G|1|A5|A|384
9Y4G|1|A5|A|385
9Y4G|1|A5|A|386
9Y4G|1|A5|G|387
9Y4G|1|A5|A|388
9Y4G|1|A5|A|389
9Y4G|1|A5|C|390
*
9Y4G|1|A5|G|401
9Y4G|1|A5|A|402
9Y4G|1|A5|G|403
9Y4G|1|A5|U|404
9Y4G|1|A5|U|405
9Y4G|1|A5|C|406
9Y4G|1|A5|A|407
9Y4G|1|A5|A|408
9Y4G|1|A5|G|409
9Y4G|1|A5|A|410
9Y4G|1|A5|G|411
9Y4G|1|A5|G|412
9Y4G|1|A5|G|413
9Y4G|1|A5|C|414
9Y4G|1|A5|G|415
*
9Y4G|1|A8|C|19
9Y4G|1|A8|A|20

Current chains

Chain A5

LSU-alpha rRNA

Chain A8

5.8S rRNA (157-MER)

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L17

Chain CY

60S ribosomal protein L26

Chain Cl

60S ribosomal protein L39