J3_9Y4G_005
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCG*CGGGGU
- Length
- 28 nucleotides
- Bulged bases
- 9Y4G|1|A5|G|959, 9Y4G|1|A5|G|963, 9Y4G|1|A5|A|964, 9Y4G|1|A5|G|965, 9Y4G|1|A5|A|966, 9Y4G|1|A5|C|967, 9Y4G|1|A5|G|970, 9Y4G|1|A5|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A5|A|711
9Y4G|1|A5|C|712
9Y4G|1|A5|C|713
*
9Y4G|1|A5|G|955
9Y4G|1|A5|A|956
9Y4G|1|A5|G|957
9Y4G|1|A5|G|958
9Y4G|1|A5|G|959
9Y4G|1|A5|A|960
9Y4G|1|A5|G|961
9Y4G|1|A5|C|962
9Y4G|1|A5|G|963
9Y4G|1|A5|A|964
9Y4G|1|A5|G|965
9Y4G|1|A5|A|966
9Y4G|1|A5|C|967
9Y4G|1|A5|C|968
9Y4G|1|A5|C|969
9Y4G|1|A5|G|970
9Y4G|1|A5|U|971
9Y4G|1|A5|C|972
9Y4G|1|A5|G|973
*
9Y4G|1|A5|C|1280
9Y4G|1|A5|G|1281
9Y4G|1|A5|G|1282
9Y4G|1|A5|G|1283
9Y4G|1|A5|G|1284
9Y4G|1|A5|U|1285
Current chains
- Chain A5
- LSU-alpha rRNA
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CE
- 60S ribosomal protein L6
- Chain CF
- 60S ribosomal protein L7
- Chain Ce
- 60S ribosomal protein L32
- Chain Cf
- 60S ribosomal protein L35a
- Chain Cr
- 60S ribosomal protein L28
Coloring options: