J3_9Y4G_006

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUC*GCCGG*CACGCGGACGGCGGAGCGA

Length

28 nucleotides

Bulged bases

9Y4G|1|A5|G|1273

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|U|980
9Y4G|1|A5|C|981
9Y4G|1|A5|U|982
9Y4G|1|A5|C|983
*
9Y4G|1|A5|G|1070
9Y4G|1|A5|C|1071
9Y4G|1|A5|C|1072
9Y4G|1|A5|G|1073
9Y4G|1|A5|G|1074
*
9Y4G|1|A5|C|1237
9Y4G|1|A5|A|1238
9Y4G|1|A5|C|1239
9Y4G|1|A5|G|1240
9Y4G|1|A5|C|1241
9Y4G|1|A5|G|1242
9Y4G|1|A5|G|1262
9Y4G|1|A5|A|1263
9Y4G|1|A5|C|1264
9Y4G|1|A5|G|1265
9Y4G|1|A5|G|1266
9Y4G|1|A5|C|1267
9Y4G|1|A5|G|1268
9Y4G|1|A5|G|1269
9Y4G|1|A5|A|1270
9Y4G|1|A5|G|1271
9Y4G|1|A5|C|1272
9Y4G|1|A5|G|1273
9Y4G|1|A5|A|1274

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6

Chain CF

60S ribosomal protein L7