J3_9Y4G_009

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9Y4G|1|A5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A5|G|1545
9Y4G|1|A5|C|1546
9Y4G|1|A5|A|1547
9Y4G|1|A5|G|1548
*
9Y4G|1|A5|C|1580
9Y4G|1|A5|G|1581
9Y4G|1|A5|U|1582
9Y4G|1|A5|A|1583
9Y4G|1|A5|G|1584
*
9Y4G|1|A5|U|1609
9Y4G|1|A5|C|1610
9Y4G|1|A5|C|1611
9Y4G|1|A5|G|1612
9Y4G|1|A5|A|1613
9Y4G|1|A5|C|1614

Current chains

Chain A5

LSU-alpha rRNA

Nearby chains

Chain A6

Large subunit ribosomal RNA; LSU rRNA

Chain CA

60S ribosomal protein L8

Chain CR

60S ribosomal protein L19

Chain Cg

60S ribosomal protein L34

Chain Cp

60S ribosomal protein L37a