J3_9Y4G_015
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 9Y4G|1|A6|C|2470, 9Y4G|1|A6|A|2472, 9Y4G|1|A6|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A6|A|2451
9Y4G|1|A6|G|2452
9Y4G|1|A6|A|2453
9Y4G|1|A6|U|2454
9Y4G|1|A6|G|2455
9Y4G|1|A6|G|2456
*
9Y4G|1|A6|C|2465
9Y4G|1|A6|G|2466
9Y4G|1|A6|U|2467
9Y4G|1|A6|U|2468
9Y4G|1|A6|C|2469
9Y4G|1|A6|C|2470
9Y4G|1|A6|G|2471
9Y4G|1|A6|A|2472
9Y4G|1|A6|A|2473
9Y4G|1|A6|G|2474
9Y4G|1|A6|G|2475
9Y4G|1|A6|G|2476
*
9Y4G|1|A6|C|2501
9Y4G|1|A6|G|2502
9Y4G|1|A6|G|2503
9Y4G|1|A6|C|2504
9Y4G|1|A6|C|2505
9Y4G|1|A6|G|2506
9Y4G|1|A6|A|2507
9Y4G|1|A6|U|2508
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- 60S ribosomal protein L8
- Chain CG
- 60S ribosomal protein L7a
- Chain CN
- 60S ribosomal protein L15
- Chain CX
- 60S ribosomal protein L23a
- Chain Cj
- 60S ribosomal protein L37
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