J3_9Y4G_016

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGAU*AGU*AGGGUGUAAAUCUC

Length

23 nucleotides

Bulged bases

9Y4G|1|A6|A|2553, 9Y4G|1|A6|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|G|2549
9Y4G|1|A6|G|2550
9Y4G|1|A6|A|2551
9Y4G|1|A6|G|2552
9Y4G|1|A6|A|2553
9Y4G|1|A6|U|2554
*
9Y4G|1|A6|A|2573
9Y4G|1|A6|G|2574
9Y4G|1|A6|U|2575
*
9Y4G|1|A6|A|2757
9Y4G|1|A6|G|2758
9Y4G|1|A6|G|2759
9Y4G|1|A6|G|2760
9Y4G|1|A6|U|2761
9Y4G|1|A6|G|2762
9Y4G|1|A6|U|2763
9Y4G|1|A6|A|2764
9Y4G|1|A6|A|2765
9Y4G|1|A6|A|2766
9Y4G|1|A6|U|2767
9Y4G|1|A6|C|2768
9Y4G|1|A6|U|2769
9Y4G|1|A6|C|2770

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CZ

60S ribosomal protein L27

Chain Cg

60S ribosomal protein L34

Chain Ck

60S ribosomal protein L38