J3_9Y4G_020
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9Y4G|1|A6|U|4117, 9Y4G|1|A6|U|4118, 9Y4G|1|A6|C|4119, 9Y4G|1|A6|U|4120, 9Y4G|1|A6|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A6|G|4091
9Y4G|1|A6|G|4092
9Y4G|1|A6|G|4093
9Y4G|1|A6|G|4094
*
9Y4G|1|A6|C|4114
9Y4G|1|A6|G|4115
9Y4G|1|A6|C|4116
9Y4G|1|A6|U|4117
9Y4G|1|A6|U|4118
9Y4G|1|A6|C|4119
9Y4G|1|A6|U|4120
9Y4G|1|A6|G|4121
9Y4G|1|A6|G|4122
9Y4G|1|A6|C|4123
9Y4G|1|A6|G|4124
9Y4G|1|A6|C|4125
9Y4G|1|A6|C|4126
9Y4G|1|A6|A|4127
9Y4G|1|A6|A|4128
9Y4G|1|A6|G|4129
*
9Y4G|1|A6|C|4155
9Y4G|1|A6|G|4156
9Y4G|1|A6|A|4157
9Y4G|1|A6|C|4158
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AB
- 40S ribosomal protein S3a
- Chain CA
- 60S ribosomal protein L8
- Chain CG
- 60S ribosomal protein L7a
- Chain CX
- 60S ribosomal protein L23a
- Chain CZ
- 60S ribosomal protein L27
- Chain Cg
- 60S ribosomal protein L34
- Chain Cp
- 60S ribosomal protein L37a
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