J3_9Y4G_022

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9Y4G|1|A6|A|4280, 9Y4G|1|A6|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|A6|C|4241
9Y4G|1|A6|U|4242
9Y4G|1|A6|C|4243
*
9Y4G|1|A6|G|4267
9Y4G|1|A6|A|4268
9Y4G|1|A6|G|4269
*
9Y4G|1|A6|C|4278
9Y4G|1|A6|A|4279
9Y4G|1|A6|A|4280
9Y4G|1|A6|A|4281
9Y4G|1|A6|A|4282
9Y4G|1|A6|G|4283

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CD

60S ribosomal protein L5

Chain CJ

60S ribosomal protein L11

Chain CT

60S ribosomal protein L21