J3_9Y4G_024
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCGGUUG*CCCUUCGU*ACGCACCGCACGUUCGUGG
- Length
- 34 nucleotides
- Bulged bases
- 9Y4G|1|A6|G|4750, 9Y4G|1|A6|C|4883, 9Y4G|1|A6|C|4937, 9Y4G|1|A6|C|4939, 9Y4G|1|A6|C|4940, 9Y4G|1|A6|G|4945, 9Y4G|1|A6|U|4946, 9Y4G|1|A6|U|4947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A6|U|4748
9Y4G|1|A6|C|4749
9Y4G|1|A6|G|4750
9Y4G|1|A6|G|4751
9Y4G|1|A6|U|4752
9Y4G|1|A6|U|4753
9Y4G|1|A6|G|4754
*
9Y4G|1|A6|C|4878
9Y4G|1|A6|C|4879
9Y4G|1|A6|C|4880
9Y4G|1|A6|U|4881
9Y4G|1|A6|U|4882
9Y4G|1|A6|C|4883
9Y4G|1|A6|G|4884
9Y4G|1|A6|U|4885
*
9Y4G|1|A6|A|4934
9Y4G|1|A6|C|4935
9Y4G|1|A6|G|4936
9Y4G|1|A6|C|4937
9Y4G|1|A6|A|4938
9Y4G|1|A6|C|4939
9Y4G|1|A6|C|4940
9Y4G|1|A6|G|4941
9Y4G|1|A6|C|4942
9Y4G|1|A6|A|4943
9Y4G|1|A6|C|4944
9Y4G|1|A6|G|4945
9Y4G|1|A6|U|4946
9Y4G|1|A6|U|4947
9Y4G|1|A6|C|4948
9Y4G|1|A6|G|4949
9Y4G|1|A6|U|4950
9Y4G|1|A6|G|4951
9Y4G|1|A6|G|4952
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CE
- 60S ribosomal protein L6
- Chain CM
- 60S ribosomal protein L14
- Chain CO
- 60S ribosomal protein L13a
- Chain CS
- 60S ribosomal protein L18a
- Chain Cf
- 60S ribosomal protein L35a
Coloring options: