J3_9Y4G_029

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

9Y4G|1|B2|U|227, 9Y4G|1|B2|C|228, 9Y4G|1|B2|U|286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|B2|C|223
9Y4G|1|B2|A|224
9Y4G|1|B2|G|225
9Y4G|1|B2|A|226
9Y4G|1|B2|U|227
9Y4G|1|B2|C|228
9Y4G|1|B2|A|229
9Y4G|1|B2|A|230
9Y4G|1|B2|A|231
9Y4G|1|B2|A|232
9Y4G|1|B2|C|233
9Y4G|1|B2|C|234
9Y4G|1|B2|A|235
9Y4G|1|B2|A|236
9Y4G|1|B2|C|237
9Y4G|1|B2|C|238
*
9Y4G|1|B2|G|283
9Y4G|1|B2|C|284
9Y4G|1|B2|U|285
9Y4G|1|B2|U|286
9Y4G|1|B2|U|287
9Y4G|1|B2|G|288
*
9Y4G|1|B2|C|295
9Y4G|1|B2|U|296
9Y4G|1|B2|A|297
9Y4G|1|B2|G|298

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11