J3_9Y4G_038

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9Y4G|1|B2|G|1274, 9Y4G|1|B2|G|1507, 9Y4G|1|B2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|B2|C|1272
9Y4G|1|B2|C|1273
9Y4G|1|B2|G|1274
9Y4G|1|B2|G|1275
9Y4G|1|B2|A|1276
9Y4G|1|B2|C|1277
*
9Y4G|1|B2|G|1320
9Y4G|1|B2|G|1321
9Y4G|1|B2|G|1322
9Y4G|1|B2|U|1323
9Y4G|1|B2|G|1324
*
9Y4G|1|B2|U|1504
9Y4G|1|B2|U|1505
9Y4G|1|B2|A|1506
9Y4G|1|B2|G|1507
9Y4G|1|B2|A|1508
9Y4G|1|B2|U|1509
9Y4G|1|B2|G|1510

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AK

40S ribosomal protein S10

Chain Ad

40S ribosomal protein S29

Chain Af

40S ribosomal protein S27a