J3_9Y79_001

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_001 not in the Motif Atlas

Geometric match to J3_8B0X_001

Geometric discrepancy: 0.1167

The information below is about J3_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9Y79|1|D|G|46
9Y79|1|D|C|47
*
9Y79|1|D|G|361
9Y79|1|D|G|362
9Y79|1|D|A|363
9Y79|1|D|A|364
9Y79|1|D|U|365
9Y79|1|D|A|366
9Y79|1|D|U|367
*
9Y79|1|D|A|393
9Y79|1|D|G|394
9Y79|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

Small ribosomal subunit protein bS16