J3_9Y79_018

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

9Y79|1|a|A|504, 9Y79|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_018 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.2307

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.3

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9Y79|1|a|G|30
9Y79|1|a|C|31
*
9Y79|1|a|G|474
9Y79|1|a|C|475
9Y79|1|a|G|476
9Y79|1|a|A|477
9Y79|1|a|A|478
9Y79|1|a|A|479
9Y79|1|a|A|480
9Y79|1|a|G|481
9Y79|1|a|A|482
9Y79|1|a|A|483
9Y79|1|a|C|484
*
9Y79|1|a|G|496
9Y79|1|a|A|497
9Y79|1|a|G|498
9Y79|1|a|U|499
9Y79|1|a|G|500
9Y79|1|a|A|501
9Y79|1|a|A|502
9Y79|1|a|A|503
9Y79|1|a|A|504
9Y79|1|a|A|505
9Y79|1|a|G|506
9Y79|1|a|A|507
9Y79|1|a|A|508
9Y79|1|a|C|509
9Y79|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20