J3_9Y79_021

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9Y79|1|a|U|686, 9Y79|1|a|A|792, 9Y79|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y79_021 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.172

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.3

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

9Y79|1|a|U|683
9Y79|1|a|G|684
9Y79|1|a|A|685
9Y79|1|a|U|686
9Y79|1|a|C|687
9Y79|1|a|U|688
9Y79|1|a|A|689
*
9Y79|1|a|U|773
9Y79|1|a|G|774
9Y79|1|a|G|775
*
9Y79|1|a|C|791
9Y79|1|a|A|792
9Y79|1|a|A|793
9Y79|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34