J3_9Y79_026

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|a|U|1344
9Y79|1|a|C|1345
9Y79|1|a|G|1346
9Y79|1|a|A|1347
9Y79|1|a|C|1348
9Y79|1|a|C|1349
*
9Y79|1|a|G|1382
9Y79|1|a|A|1383
9Y79|1|a|A|1384
9Y79|1|a|A|1385
*
9Y79|1|a|U|1402
9Y79|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23