J3_9Y79_034
3D structure
- PDB id
- 9Y79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9Y79|1|d|U|14, 9Y79|1|d|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y79|1|d|G|10
9Y79|1|d|C|11
9Y79|1|d|C|12
9Y79|1|d|G|13
9Y79|1|d|U|14
9Y79|1|d|A|15
9Y79|1|d|G|16
*
9Y79|1|d|C|68
9Y79|1|d|G|69
9Y79|1|d|C|70
*
9Y79|1|d|G|106
9Y79|1|d|G|107
9Y79|1|d|A|108
9Y79|1|d|A|109
9Y79|1|d|C|110
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL25
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L27
- Chain x
- Large ribosomal subunit protein uL18
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