J3_9YDB_002
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 9YDB|1|A|U|117, 9YDB|1|A|G|120, 9YDB|1|A|A|121, 9YDB|1|A|U|147, 9YDB|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|113
9YDB|1|A|A|114
9YDB|1|A|A|115
9YDB|1|A|A|116
9YDB|1|A|U|117
9YDB|1|A|U|118
9YDB|1|A|U|119
9YDB|1|A|G|120
9YDB|1|A|A|121
9YDB|1|A|A|122
9YDB|1|A|A|123
9YDB|1|A|U|124
*
9YDB|1|A|A|144
9YDB|1|A|G|145
9YDB|1|A|U|146
9YDB|1|A|U|147
9YDB|1|A|G|148
9YDB|1|A|U|149
9YDB|1|A|A|150
9YDB|1|A|A|151
9YDB|1|A|U|152
9YDB|1|A|U|153
9YDB|1|A|U|154
9YDB|1|A|G|155
9YDB|1|A|G|156
9YDB|1|A|A|157
9YDB|1|A|G|158
*
9YDB|1|A|C|263
9YDB|1|A|G|264
9YDB|1|A|A|265
9YDB|1|A|A|266
9YDB|1|A|G|267
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: