J3_9YDB_004
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9YDB|1|A|U|343, 9YDB|1|A|A|351, 9YDB|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|340
9YDB|1|A|G|341
9YDB|1|A|A|342
9YDB|1|A|U|343
9YDB|1|A|A|344
9YDB|1|A|G|345
9YDB|1|A|C|346
9YDB|1|A|G|347
9YDB|1|A|A|348
9YDB|1|A|A|349
9YDB|1|A|C|350
9YDB|1|A|A|351
9YDB|1|A|A|352
9YDB|1|A|G|353
9YDB|1|A|U|354
9YDB|1|A|A|355
9YDB|1|A|C|356
*
9YDB|1|A|G|363
9YDB|1|A|G|364
9YDB|1|A|A|365
9YDB|1|A|A|366
9YDB|1|A|A|367
9YDB|1|A|G|368
*
9YDB|1|C|C|21
9YDB|1|C|U|22
9YDB|1|C|U|23
9YDB|1|C|G|24
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
Coloring options: