J3_9YDB_006
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9YDB|1|A|A|398, 9YDB|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|A|369
9YDB|1|A|U|370
9YDB|1|A|G|371
9YDB|1|A|A|372
9YDB|1|A|A|373
9YDB|1|A|A|374
9YDB|1|A|A|375
9YDB|1|A|G|376
9YDB|1|A|A|377
9YDB|1|A|A|378
9YDB|1|A|C|379
*
9YDB|1|A|G|390
9YDB|1|A|A|391
9YDB|1|A|G|392
9YDB|1|A|U|393
9YDB|1|A|G|394
9YDB|1|A|A|395
9YDB|1|A|A|396
9YDB|1|A|A|397
9YDB|1|A|A|398
9YDB|1|A|A|399
9YDB|1|A|G|400
9YDB|1|A|U|401
9YDB|1|A|A|402
9YDB|1|A|C|403
9YDB|1|A|G|404
*
9YDB|1|C|C|19
9YDB|1|C|U|20
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ln
- 60S ribosomal protein L39
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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