J3_9YDB_010
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 9YDB|1|A|A|1065, 9YDB|1|A|U|1094, 9YDB|1|A|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|U|986
9YDB|1|A|U|987
*
9YDB|1|A|A|1062
9YDB|1|A|G|1063
9YDB|1|A|A|1064
9YDB|1|A|A|1065
9YDB|1|A|G|1066
*
9YDB|1|A|C|1092
9YDB|1|A|A|1093
9YDB|1|A|U|1094
9YDB|1|A|U|1095
9YDB|1|A|U|1096
9YDB|1|A|G|1097
9YDB|1|A|A|1098
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LI
- 60S ribosomal protein L7-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
Coloring options: