J3_9YDB_011
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 9YDB|1|A|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|U|1479
9YDB|1|A|G|1480
9YDB|1|A|A|1481
9YDB|1|A|A|1482
9YDB|1|A|G|1483
9YDB|1|A|U|1484
9YDB|1|A|G|1485
*
9YDB|1|A|C|1857
9YDB|1|A|A|1858
9YDB|1|A|A|1859
*
9YDB|1|A|U|1871
9YDB|1|A|C|1872
9YDB|1|A|U|1873
9YDB|1|A|A|1874
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain Li
- 60S ribosomal protein L34-A
Coloring options: