J3_9YDB_013
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|U|1526
9YDB|1|A|C|1527
9YDB|1|A|G|1528
9YDB|1|A|A|1529
9YDB|1|A|U|1530
9YDB|1|A|C|1531
*
9YDB|1|A|G|1591
9YDB|1|A|G|1592
9YDB|1|A|A|1593
9YDB|1|A|A|1594
9YDB|1|A|U|1595
*
9YDB|1|A|A|1612
9YDB|1|A|A|1613
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LZ
- 60S ribosomal protein L25
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lm
- 60S ribosomal protein L38
- Chain Ln
- 60S ribosomal protein L39
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