J3_9YDB_014
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 9YDB|1|A|C|1556, 9YDB|1|A|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|A|1537
9YDB|1|A|G|1538
9YDB|1|A|A|1539
9YDB|1|A|U|1540
9YDB|1|A|G|1541
9YDB|1|A|G|1542
*
9YDB|1|A|C|1551
9YDB|1|A|G|1552
9YDB|1|A|U|1553
9YDB|1|A|U|1554
9YDB|1|A|U|1555
9YDB|1|A|C|1556
9YDB|1|A|A|1557
9YDB|1|A|A|1558
9YDB|1|A|A|1559
9YDB|1|A|G|1560
*
9YDB|1|A|C|1579
9YDB|1|A|A|1580
9YDB|1|A|C|1581
9YDB|1|A|C|1582
9YDB|1|A|A|1583
9YDB|1|A|U|1584
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Ll
- 60S ribosomal protein L37-A
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