J3_9YDB_018
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 9YDB|1|A|G|2549, 9YDB|1|A|U|2550, 9YDB|1|A|U|2551, 9YDB|1|A|C|2552, 9YDB|1|A|U|2553, 9YDB|1|A|A|2554, 9YDB|1|A|U|2558, 9YDB|1|A|U|2559, 9YDB|1|A|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|A|2529
9YDB|1|A|G|2530
9YDB|1|A|C|2531
9YDB|1|A|U|2532
*
9YDB|1|A|A|2547
9YDB|1|A|C|2548
9YDB|1|A|G|2549
9YDB|1|A|U|2550
9YDB|1|A|U|2551
9YDB|1|A|C|2552
9YDB|1|A|U|2553
9YDB|1|A|A|2554
9YDB|1|A|G|2555
9YDB|1|A|C|2556
9YDB|1|A|A|2557
9YDB|1|A|U|2558
9YDB|1|A|U|2559
9YDB|1|A|C|2560
9YDB|1|A|A|2561
9YDB|1|A|A|2562
9YDB|1|A|G|2563
*
9YDB|1|A|U|2578
9YDB|1|A|G|2579
9YDB|1|A|A|2580
9YDB|1|A|U|2581
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lb
- 60S ribosomal protein L27-A
- Chain Le
- 60S ribosomal protein L30
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
Coloring options: