J3_9YDB_019
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 9YDB|1|A|C|2760, 9YDB|1|A|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|G|2651
9YDB|1|A|U|2652
9YDB|1|A|C|2653
*
9YDB|1|A|G|2754
9YDB|1|A|C|2755
9YDB|1|A|C|2756
9YDB|1|A|U|2757
9YDB|1|A|A|2758
9YDB|1|A|U|2759
9YDB|1|A|C|2760
9YDB|1|A|G|2761
9YDB|1|A|A|2762
9YDB|1|A|U|2763
9YDB|1|A|C|2764
9YDB|1|A|C|2765
*
9YDB|1|A|G|2793
9YDB|1|A|G|2794
9YDB|1|A|U|2795
9YDB|1|A|G|2796
9YDB|1|A|C|2797
9YDB|1|A|C|2798
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
- Chain V
- 60S ribosomal export protein NMD3
Coloring options: