J3_9YDB_020
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9YDB|1|A|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|2664
9YDB|1|A|U|2665
9YDB|1|A|C|2666
*
9YDB|1|A|G|2690
9YDB|1|A|A|2691
9YDB|1|A|A|2692
*
9YDB|1|A|U|2701
9YDB|1|A|A|2702
9YDB|1|A|A|2703
9YDB|1|A|A|2704
9YDB|1|A|A|2705
9YDB|1|A|G|2706
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- Large ribosomal subunit protein uL5B
- Chain LV
- 60S ribosomal protein L21-A
- Chain V
- 60S ribosomal export protein NMD3
Coloring options: