J3_9YDB_022
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 9YDB|1|A|A|3172, 9YDB|1|A|G|3173, 9YDB|1|A|A|3215, 9YDB|1|A|G|3216, 9YDB|1|A|G|3219, 9YDB|1|A|A|3268, 9YDB|1|A|U|3270, 9YDB|1|A|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|U|3171
9YDB|1|A|A|3172
9YDB|1|A|G|3173
9YDB|1|A|A|3174
9YDB|1|A|U|3175
9YDB|1|A|G|3176
*
9YDB|1|A|C|3212
9YDB|1|A|A|3213
9YDB|1|A|U|3214
9YDB|1|A|A|3215
9YDB|1|A|G|3216
9YDB|1|A|C|3217
9YDB|1|A|A|3218
9YDB|1|A|G|3219
9YDB|1|A|G|3220
*
9YDB|1|A|C|3265
9YDB|1|A|G|3266
9YDB|1|A|A|3267
9YDB|1|A|A|3268
9YDB|1|A|U|3269
9YDB|1|A|U|3270
9YDB|1|A|G|3271
9YDB|1|A|C|3272
9YDB|1|A|A|3273
9YDB|1|A|A|3274
9YDB|1|A|U|3275
9YDB|1|A|G|3276
9YDB|1|A|U|3277
9YDB|1|A|C|3278
9YDB|1|A|A|3279
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LO
- 60S ribosomal protein L14-A
- Chain LQ
- 60S ribosomal protein L16-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lh
- 60S ribosomal protein L33-A
Coloring options: