J3_9YDC_001
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 9YDC|1|A|U|117, 9YDC|1|A|G|120, 9YDC|1|A|A|121, 9YDC|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDC_001 not in the Motif Atlas
- Homologous match to J3_9PN5_001
- Geometric discrepancy: 0.0949
- The information below is about J3_9PN5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.4
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9YDC|1|A|C|113
9YDC|1|A|A|114
9YDC|1|A|A|115
9YDC|1|A|A|116
9YDC|1|A|U|117
9YDC|1|A|U|118
9YDC|1|A|U|119
9YDC|1|A|G|120
9YDC|1|A|A|121
9YDC|1|A|A|122
9YDC|1|A|A|123
*
9YDC|1|A|U|149
9YDC|1|A|A|150
9YDC|1|A|A|151
9YDC|1|A|U|152
9YDC|1|A|U|153
9YDC|1|A|U|154
9YDC|1|A|G|155
9YDC|1|A|G|156
9YDC|1|A|A|157
9YDC|1|A|G|158
*
9YDC|1|A|C|263
9YDC|1|A|G|264
9YDC|1|A|A|265
9YDC|1|A|A|266
9YDC|1|A|G|267
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Lk
- 60S ribosomal protein L36-A
Coloring options: