J3_9YDC_011
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 9YDC|1|A|A|1482, 9YDC|1|A|U|1484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDC_011 not in the Motif Atlas
- Homologous match to J3_9PN5_012
- Geometric discrepancy: 0.0961
- The information below is about J3_9PN5_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.4
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9YDC|1|A|U|1479
9YDC|1|A|G|1480
9YDC|1|A|A|1481
9YDC|1|A|A|1482
9YDC|1|A|G|1483
9YDC|1|A|U|1484
9YDC|1|A|G|1485
*
9YDC|1|A|C|1857
9YDC|1|A|A|1858
9YDC|1|A|A|1859
*
9YDC|1|A|U|1871
9YDC|1|A|C|1872
9YDC|1|A|U|1873
9YDC|1|A|A|1874
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain Li
- 60S ribosomal protein L34-A
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