J3_9YDD_006
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9YDD|1|A|A|398, 9YDD|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_006 not in the Motif Atlas
- Homologous match to J3_9SUM_005
- Geometric discrepancy: 0.0675
- The information below is about J3_9SUM_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9YDD|1|A|A|369
9YDD|1|A|U|370
9YDD|1|A|G|371
9YDD|1|A|A|372
9YDD|1|A|A|373
9YDD|1|A|A|374
9YDD|1|A|A|375
9YDD|1|A|G|376
9YDD|1|A|A|377
9YDD|1|A|A|378
9YDD|1|A|C|379
*
9YDD|1|A|G|390
9YDD|1|A|A|391
9YDD|1|A|G|392
9YDD|1|A|U|393
9YDD|1|A|G|394
9YDD|1|A|A|395
9YDD|1|A|A|396
9YDD|1|A|A|397
9YDD|1|A|A|398
9YDD|1|A|A|399
9YDD|1|A|G|400
9YDD|1|A|U|401
9YDD|1|A|A|402
9YDD|1|A|C|403
9YDD|1|A|G|404
*
9YDD|1|C|C|19
9YDD|1|C|U|20
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ln
- 60S ribosomal protein L39
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