J3_9YDD_008
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|A|A|817, 9YDD|1|A|G|924, 9YDD|1|A|A|925
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_008 not in the Motif Atlas
- Homologous match to J3_9AXU_009
- Geometric discrepancy: 0.0493
- The information below is about J3_9AXU_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|U|814
9YDD|1|A|G|815
9YDD|1|A|A|816
9YDD|1|A|A|817
9YDD|1|A|C|818
9YDD|1|A|U|819
9YDD|1|A|A|820
*
9YDD|1|A|U|905
9YDD|1|A|A|906
9YDD|1|A|G|907
*
9YDD|1|A|C|923
9YDD|1|A|G|924
9YDD|1|A|A|925
9YDD|1|A|A|926
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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