J3_9YDD_016
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_016 not in the Motif Atlas
- Homologous match to J3_9PN5_017
- Geometric discrepancy: 0.0693
- The information below is about J3_9PN5_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.4
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|A|A|1654
9YDD|1|A|G|1655
9YDD|1|A|A|1656
9YDD|1|A|C|1657
9YDD|1|A|G|1658
*
9YDD|1|A|C|1791
9YDD|1|A|C|1792
*
9YDD|1|A|G|1796
9YDD|1|A|A|1797
9YDD|1|A|A|1798
9YDD|1|A|A|1799
9YDD|1|A|A|1800
9YDD|1|A|U|1801
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lr
- 60S ribosomal protein L43-A
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