J3_9YDD_019
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 9YDD|1|A|C|2760, 9YDD|1|A|C|2797
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_019 not in the Motif Atlas
- Homologous match to J3_9SUM_019
- Geometric discrepancy: 0.0471
- The information below is about J3_9SUM_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.4
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9YDD|1|A|G|2651
9YDD|1|A|U|2652
9YDD|1|A|C|2653
*
9YDD|1|A|G|2754
9YDD|1|A|C|2755
9YDD|1|A|C|2756
9YDD|1|A|U|2757
9YDD|1|A|A|2758
9YDD|1|A|U|2759
9YDD|1|A|C|2760
9YDD|1|A|G|2761
9YDD|1|A|A|2762
9YDD|1|A|U|2763
9YDD|1|A|C|2764
9YDD|1|A|C|2765
*
9YDD|1|A|G|2793
9YDD|1|A|G|2794
9YDD|1|A|U|2795
9YDD|1|A|G|2796
9YDD|1|A|C|2797
9YDD|1|A|C|2798
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
Coloring options: