J3_9YDD_020
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9YDD|1|A|A|2703, 9YDD|1|A|A|2705
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_020 not in the Motif Atlas
- Homologous match to J3_9SUM_020
- Geometric discrepancy: 0.0598
- The information below is about J3_9SUM_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.4
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|C|2664
9YDD|1|A|U|2665
9YDD|1|A|C|2666
*
9YDD|1|A|G|2690
9YDD|1|A|A|2691
9YDD|1|A|A|2692
*
9YDD|1|A|U|2701
9YDD|1|A|A|2702
9YDD|1|A|A|2703
9YDD|1|A|A|2704
9YDD|1|A|A|2705
9YDD|1|A|G|2706
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LM
- Large ribosomal subunit protein uL5B
- Chain LV
- 60S ribosomal protein L21-A
- Chain n
- Transfer RNA; tRNA
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