J3_9YDD_023
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_023 not in the Motif Atlas
- Homologous match to J3_9PN5_024
- Geometric discrepancy: 0.0782
- The information below is about J3_9PN5_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDD|1|A|C|3298
9YDD|1|A|A|3299
9YDD|1|A|U|3300
*
9YDD|1|A|A|3314
9YDD|1|A|G|3315
9YDD|1|A|A|3316
9YDD|1|A|U|3317
9YDD|1|A|G|3318
*
9YDD|1|A|C|3388
9YDD|1|A|U|3389
9YDD|1|A|G|3390
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lf
- 60S ribosomal protein L31-A
Coloring options: