J3_9YDD_024
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|B|U|12
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_024 not in the Motif Atlas
- Homologous match to J3_8QYX_024
- Geometric discrepancy: 0.0729
- The information below is about J3_8QYX_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.4
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YDD|1|B|C|9
9YDD|1|B|C|10
9YDD|1|B|A|11
9YDD|1|B|U|12
9YDD|1|B|A|13
9YDD|1|B|U|14
*
9YDD|1|B|A|66
9YDD|1|B|G|67
*
9YDD|1|B|U|111
9YDD|1|B|G|112
Current chains
- Chain B
- 5S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- 60S ribosomal protein L5
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LV
- 60S ribosomal protein L21-A
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