J3_9YDD_031
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9YDD|1|E|C|934
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_031 not in the Motif Atlas
- Homologous match to J3_9PN5_033
- Geometric discrepancy: 0.06
- The information below is about J3_9PN5_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDD|1|E|A|881
9YDD|1|E|U|882
9YDD|1|E|C|883
9YDD|1|E|A|884
*
9YDD|1|E|U|928
9YDD|1|E|A|929
9YDD|1|E|A|930
9YDD|1|E|C|931
9YDD|1|E|U|932
9YDD|1|E|A|933
9YDD|1|E|C|934
9YDD|1|E|U|935
9YDD|1|E|G|936
*
9YDD|1|E|C|943
9YDD|1|E|A|944
9YDD|1|E|U|945
9YDD|1|E|U|946
9YDD|1|E|U|947
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain Lr
- 60S ribosomal protein L43-A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- 40S ribosomal protein S13
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- Small ribosomal subunit protein eS26B
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