J3_9YDD_033
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_033 not in the Motif Atlas
- Homologous match to J3_9PN5_035
- Geometric discrepancy: 0.1945
- The information below is about J3_9PN5_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|C|1161
9YDD|1|E|C|1162
9YDD|1|E|A|1163
9YDD|1|E|G|1164
*
9YDD|1|E|C|1581
9YDD|1|E|U|1582
9YDD|1|E|A|1583
9YDD|1|E|G|1584
9YDD|1|E|U|1585
9YDD|1|E|A|1586
9YDD|1|E|A|1587
*
9YDD|1|E|U|1609
9YDD|1|E|G|1610
9YDD|1|E|A|1611
9YDD|1|E|U|1612
9YDD|1|E|U|1613
9YDD|1|E|A|1614
9YDD|1|E|C|1615
9YDD|1|E|G|1616
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SL
- 40S ribosomal protein S28-A
Coloring options: