J3_9YDD_036
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 9YDD|1|E|A|1217, 9YDD|1|E|G|1445, 9YDD|1|E|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_036 not in the Motif Atlas
- Homologous match to J3_9PN5_038
- Geometric discrepancy: 0.1345
- The information below is about J3_9PN5_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.4
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|E|C|1215
9YDD|1|E|C|1216
9YDD|1|E|A|1217
9YDD|1|E|G|1218
9YDD|1|E|A|1219
9YDD|1|E|C|1220
*
9YDD|1|E|G|1263
9YDD|1|E|G|1264
9YDD|1|E|G|1265
9YDD|1|E|U|1266
9YDD|1|E|G|1267
*
9YDD|1|E|U|1442
9YDD|1|E|U|1443
9YDD|1|E|A|1444
9YDD|1|E|G|1445
9YDD|1|E|A|1446
9YDD|1|E|C|1447
9YDD|1|E|G|1448
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S10-A
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
Coloring options: