J3_9YDD_037
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_037 not in the Motif Atlas
- Homologous match to J3_9H3G_039
- Geometric discrepancy: 0.0849
- The information below is about J3_9H3G_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|E|U|1283
9YDD|1|E|C|1284
9YDD|1|E|U|1285
9YDD|1|E|U|1286
9YDD|1|E|A|1287
9YDD|1|E|G|1288
*
9YDD|1|E|C|1327
9YDD|1|E|G|1328
9YDD|1|E|A|1329
9YDD|1|E|G|1330
9YDD|1|E|A|1331
9YDD|1|E|C|1332
*
9YDD|1|E|G|1419
9YDD|1|E|C|1420
9YDD|1|E|A|1421
9YDD|1|E|A|1422
9YDD|1|E|U|1423
9YDD|1|E|A|1424
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S3
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SR
- 40S ribosomal protein S2
Coloring options: