J3_9YDD_040
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 9YDD|1|E|U|1390, 9YDD|1|E|U|1413, 9YDD|1|E|U|1414
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_040 not in the Motif Atlas
- Homologous match to J3_9PN5_042
- Geometric discrepancy: 0.1531
- The information below is about J3_9PN5_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69856.2
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|E|A|1336
9YDD|1|E|A|1337
9YDD|1|E|C|1338
*
9YDD|1|E|G|1386
9YDD|1|E|G|1387
9YDD|1|E|A|1388
9YDD|1|E|C|1389
9YDD|1|E|U|1390
9YDD|1|E|A|1391
*
9YDD|1|E|U|1407
9YDD|1|E|G|1408
9YDD|1|E|G|1409
9YDD|1|E|A|1410
9YDD|1|E|A|1411
9YDD|1|E|G|1412
9YDD|1|E|U|1413
9YDD|1|E|U|1414
9YDD|1|E|U|1415
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SO
- Guanine nucleotide-binding protein subunit beta-like protein
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