Motif J3_69856.2 Version J3_69856.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 3-4 | 5-13 | 6-12 | 7-15 | 8-9 | 9-10 | 11-15 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9PN5_042 | 9PN5 | 0.0992 | 2 | B5 | SSU rRNA | A | 1336 | A | 1337 | C | 1338 | * | G | 1386 | G | 1387 | A | 1388 | C | 1389 | U | 1390 | A | 1391 | * | U | 1407 | G | 1408 | G | 1409 | A | 1410 | A | 1411 | G | 1412 | PSU | 1415 | cWW | cWW | tSW | tWS | cWW | cWW | tWH | |
| 2 | J3_9SUM_039 | 9SUM | 0.0000 | 2 | CA | SSU rRNA | A | 1306 | A | 1307 | C | 1308 | * | G | 1362 | G | 1363 | A | 1364 | C | 1365 | U | 1366 | A | 1367 | * | U | 1383 | G | 1384 | G | 1385 | A | 1386 | A | 1387 | G | 1388 | U | 1391 | cWW | cWW | tSW | tWS | cWW | ncSH | cWW | tWH |
| 3 | J3_8CRE_085 | 8CRE | 0.0892 | 2 | CM | SSU rRNA | A | 1321 | A | 1322 | C | 1323 | * | G | 1372 | G | 1373 | A | 1374 | C | 1375 | U | 1376 | A | 1377 | * | U | 1393 | G | 1394 | G | 1395 | A | 1396 | A | 1397 | G | 1398 | U | 1401 | cWW | cWW | tSW | tWS | cWW | ncSH | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAC*GGACUA*UGGAAGUUU | 2 |
| AAC*GGACUA*UGGAAGUUPSU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GACU*GGAAGUU | 3 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.06 | Max 0.10
Coloring options: