J3_9YDD_041
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9YDD|1|E|U|1473, 9YDD|1|E|G|1539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_041 not in the Motif Atlas
- Homologous match to J3_9SUM_040
- Geometric discrepancy: 0.1463
- The information below is about J3_9SUM_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.4
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|C|1470
9YDD|1|E|A|1471
9YDD|1|E|C|1472
9YDD|1|E|U|1473
9YDD|1|E|G|1474
*
9YDD|1|E|C|1533
9YDD|1|E|G|1534
9YDD|1|E|U|1535
9YDD|1|E|G|1536
9YDD|1|E|C|1537
9YDD|1|E|U|1538
9YDD|1|E|G|1539
9YDD|1|E|G|1540
*
9YDD|1|E|C|1571
9YDD|1|E|G|1572
9YDD|1|E|A|1573
9YDD|1|E|G|1574
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SH
- 40S ribosomal protein S18-A
- Chain SI
- 40S ribosomal protein S19-A
- Chain SK
- 40S ribosomal protein S25-A
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